Accueil > CITI Department > Stemness in Gliomas
Stemness in Gliomas
Objectives
Stem cells play a key role during development and in the homeostasis of adult tissues. Embryonic stem cells (ESC) have the unique capacities to self-renew while remaining pluripotent to generate all the cell types that constitute embryos. Along with these physiological contextes conserved accross evolution, additional cell types presentent similar properties in the context of pathologies, including cancers.
Indeed, cancer stem cells (CSC) have been identified in leukemias and in different types of solid tumors, including primary brain tumors. CSCs also present self-renewal and multipotency properties, and their enhanced plasticity contributes to intra-tumoral heterogeneity, resistance to treatments and tumor relapse.
In this context, our team combines different approaches including transcriptomics, cellular biology, biochemistry and biophysics to better characterize the emerging importance of post-transcriptional gene expression mechanisms in the control of the intrinsic properties of ESCs and of CSCs responsible for pediatric (medulloblastomas) and adult (glioblastomas) brain tumors.
Projects
Recent publications revealed that different post-transcriptional mechanisms play key roles in controlling stem cell fate, together with epigenetic and transcriptional regulations.
Firstly, we established that alternative splicing is regulated in murine and human ESCs and induced pluripotent stem cells (iPSC) to coordinate splicing programs that define the naive and pluripotent identity of stem cells (Gabut et al. Cell. 2011) (Han et al. Nature. 2013).
Recent data suggest that the translation machinery, the ribosomes, also plays an important and direct role in controlling gene expression in stem cells. Moreover, the molecular composition of ribosomes can be modulated in specific contexts, leading to the concept of specialized ribosomes which proposes that cells express different types of ribosomes adapted to their translation needs, including in pathological contexts such as cancer cells.
We hypothesize that stem cell plasticity is controlled by a coordinated regulation of the diversity of both the transcriptome (including by alternative splicing) and the machinery that translate it into a proteome: the ribosomes.
In this context, our objectives are to better characterize the role of alternative splicing and of the plasticity of ribosomes in the regulation of the molecular drivers of ESC and CSC identity maintenance. More precisely, our research aims at:
- Defining the function of splicing programs expressed in ESCs and CSCs for the maintenance of their pluripotency/multipotency and self-renewal.
- Identifying factors and signalling pathways that coordinate the regulation of these splicing programs in stem cells.
- Demonstrating that ESCs express specialized ribosomes and characterizing their role for translation control and pluripotent identity maintenance.
- Establishing the impact of translation control for ESC homeostasis and CSC tumorigenic properties.
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François Ducray, MD-PhD
francois.ducray@chu-lyon.fr
Mathieu Gabut, PhD
mathieu.gabut@inserm.frtel: +33-4 69 85 60 92
Cheney A, 4th floor
Cancer Research Centre of Lyon
28 rue Laennec
69008 LYON
FRANCE
Members
Main financing
Ligue contre le cancer comité de l’Ain
Programme ATIP-AVENIR Plan Cancer/Inserm/Fondation ARC
INCa PLBio
INCa PRT-K
INCa PHRC-K
Association Le rêve de Marie Dream
Association Pour Emma
Région Auvergne-Rhône-Alpes
Main national collaborations
Publications
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RSL24D1 sustains steady-state ribosome biogenesis and pluripotency translational programs in embryonic stem cells.
S Durand, M Bruelle, F Bourdelais, B Bennychen, J Blin-Gonthier, C Isaac, A Huyghe, S Martel, A Seyve, C Vanbelle, A Adrait, Y Couté, D Meyronet, F Catez, JJ Diaz, F Lavial, E P. Ricci, F Ducray, M Gabut Nature Communications
Challenges in glioblastoma research: focus on the tumor microenvironment.Bikfalvi A, da Costa CA, Avril T, Barnier JV, Bauchet L, Brisson L, Cartron PF, Castel H, Chevet E, Chneiweiss H, Clavreul A, Constantin B, Coronas V, Daubon T, Dontenwill M, Ducray F, Enz-Werle N, Figarella-Branger D, Fournier I, Frenel JS, Gabut M, Galli T, Gavard J, Huberfeld G, Hugnot JP, Idbaih A, Junier MP, Mathivet T, Menei P, Meyronet D, Mirjolet C, Morin F, Mosser J, Moyal EC, Rousseau V, Salzet M, Sanson M, Seano G, Tabouret E, Tchoghandjian A, Turchi L, Vallette FM, Vats S, Verreault M, Virolle T. Trends in Cancer
Molecular characterization of adult tumors diagnosed as cerebellar glioblastomas identifies subgroups associated with prognosis.Picart T, Poncet D, Barritault M, Bauchet L, Zouaoui S, Guyotat J, Gabut M, Fina F, Honnorat J, Figarella-Branger D, Pallud J, Ducray F, Meyronet D; French Brain Tumor Database; ANOCEF. The American Journal of Surgical Pathology
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Machine learning-based detection of label-free cancer stem-like cell fate.
Chambost AJ, Berabez N, Cochet-Escartin O, Ducray F, Gabut M, Isaac C, Martel S, Idbaih A, Rousseau D, Meyronet D, Monnier S. Scientific Reports
SETMAR Shorter Isoform: A NewPrognostic Factor in GlioblastomaOriane Lié, Thierry Virolle, Mathieu Gabut, Claude Pasquier, Ilyess Zemmoura, Corinne Augé-Gouillou Frontiers in Oncology
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RSL24D1 sustains steady-state ribosome biogenesis and pluripotency translational programs in embryonic stem cells.
Sébastien Durand, Marion Bruelle, Fleur Bourdelais, Bigitha Bennychen, Juliana Blin-Gonthier, Caroline Isaac, Aurélia Huyghe, Antoine Seyve, Christophe Vanbelle, David Meyronet, Frédéric Catez, Jean-Jacques Diaz, Fabrice Lavial, Emiliano P. Ricci, François Ducray, Mathieu Gabut bioRxiv
2′O-Ribose Methylation of Ribosomal RNAs: Natural Diversity in Living Organisms, Biological Processes, and Diseases .Mariam Jaafar, Hermes Paraqindes, Mathieu Gabut, Jean-Jacques Diaz, Virginie Marcel, Sébastien Durand Cells
Characteristics of diffuse hemispheric gliomas, H3 G34-mutant in adults.Picart T, Barritault M, Poncet D, Berner LP, Izquierdo C, Tabouret E, Figarella-Branger D, Idbaïh A, Bielle F, Bourg V, Vandenbos FB, Moyal EC, Uro-Coste E, Guyotat J, Honnorat J, Gabut M, Meyronet D, Ducray F. Neuro-oncology advances
Characteristics of diffuse hemispheric gliomas, H3 G34-mutant in adults.Picart T, Barritault M, Poncet D, Berner LP, Izquierdo C, Tabouret E, Figarella-Branger D, Idbaïh A, Bielle F, Bourg V, Vandenbos FB, Moyal EC, Uro-Coste E, Guyotat J, Honnorat J, Gabut M, Meyronet D, Ducray F Neuro-oncology advances
Radiotherapy Plus Procarbazine, Lomustine, and Vincristine Versus Radiotherapy Plus Temozolomide for IDH-Mutant Anaplastic Astrocytoma: A Retrospective Multicenter Analysis of the French POLA Cohort.Esteyrie V, Dehais C, Martin E, Carpentier C, Uro-Coste E, Figarella-Branger D, Bronniman C, Pouessel D, Ciron DL, Ducray F, Moyal EC, Network POLA The Oncologist
Characteristics of IDH-mutant gliomas with non-canonical IDH mutation.Poetsch L, Bronnimann C, Loiseau H, Frénel JS, Siegfried A, Seizeur R, Gauchotte G, Cappellen D, Carpentier C, Figarella-Branger D, Eimer S, Meyronet D, Ducray F; POLA network Journal of neuro-oncology
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Profiling Anti-Apoptotic BCL-xL Protein Expression in Glioblastoma Tumorspheres.
Fanfone D, Idbaih A, Mammi J, Gabut M, Ichim G. Cancers
Avoiding New Biopsies by Identification of IDH1 and TERT Promoter Mutation in Nondiagnostic Biopsies From Glioma Patients.Barritault M, Picart T, Poncet D, Fenouil T, d'Hombres A, Gabut M, Guyotat J, Jouanneau E, Ameli R, Joubert B, Streichenberger N, Vasiljevic A, Honnorat J, Meyronet D, Ducray F. Neurosurgery
Avoiding New Biopsies by Identification of IDH1 and TERT Promoter Mutation in Nondiagnostic Biopsies From Glioma Patients.Barritault M, Picart T, Poncet D, Fenouil T, d'Hombres A, Gabut M, Guyotat J, Jouanneau E, Ameli R, Joubert B, Streichenberger N, Vasiljevic A, Honnorat J, Meyronet D, Ducray F Neurosurgery
Ribosome and Translational Control in Stem Cells.Gabut M, Bourdelais F, Durand S. Cells
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Radiological Characteristics and Natural History of Adult IDH-Wildtype Astrocytomas with TERT Promoter Mutations.
Izquierdo C, Barritault M, Poncet D, Cartalat S, Joubert B, Bruna J, Jouanneau E, Guyotat J, Vasiljevic A, Fenouil T, Berthezène Y, Honnorat J, Meyronet D, Ducray F Neurosurgery
A Multiplex Quantitative Reverse Transcription Polymerase Chain Reaction Assay for the Detection of KIAA1549-BRAF Fusion Transcripts in Formalin-Fixed Paraffin-Embedded Pilocytic Astrocytomas.Bret D, Chappuis V, Poncet D, Ducray F, Silva K, Mion F, Vasiljevic A, Ferraro-Peyret C, Mottolese C, Leblond P, Gabut M, Frappaz D, Streichenberger N, Meyronet D, Bringuier PP, Barritault M. Molecular Diagnosis and Therapy
Post-transcriptional regulations of cancer stem cell homeostasis.Berabez N, Durand S, Gabut M. Current opinion in oncology
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Characteristics of cerebellar glioblastomas in adults.
Picart T, Barritault M, Berthillier J, Meyronet D, Vasiljevic A, Frappaz D, Honnorat J, Jouanneau E, Poncet D, Ducray F, Guyotat J Journal of neuro-oncology
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Long-term impact of temozolomide on 1p/19q-codeleted low-grade glioma growth kinetics.
Izquierdo C, Alentorn A, Idbaih A, Simó M, Kaloshi G, Ricard D, Barritault M, Meyronet D, Bruna J, Honnorat J, Delattre JY, Ducray F Journal of neuro-oncology
Characteristics of H3 K27M-mutant gliomas in adults.Meyronet D, Esteban-Mader M, Bonnet C, Joly MO, Uro-Coste E, Amiel-Benouaich A, Forest F, Rousselot-Denis C, Burel-Vandenbos F, Bourg V, Guyotat J, Fenouil T, Jouvet A, Honnorat J, Ducray F Neuro-oncology
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Integrated multi-omics analysis of oligodendroglial tumours identifies three subgroups of 1p/19q co-deleted gliomas.
Kamoun A, Idbaih A, Dehais C, Elarouci N, Carpentier C, Letouzé E, Colin C, Mokhtari K, Jouvet A, Uro-Coste E, Martin-Duverneuil N, Sanson M, Delattre JY, Figarella-Branger D, de Reyniès A, Ducray F; POLA network Nature communications
Hyperphosphorylation amplifies UPF1 activity to resolve stalls in nonsense-mediated mRNA decayDurand S, Franks T, Lykke-Andersen J Nat Comm
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Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells.
Ruiz S, Lopez-Contreras AJ, Gabut M, Marion RM, Gutierrez-Martinez P, Bua S, Ramirez O, Olalde I, Rodrigo-Perez S, Li H, Marques-Bonet T, Serrano M, Blasco MA, Batada NN, Fernandez-Capetillo O Nat Commun
Identification of 3’UTR Elements that Inhibit Nonsense-Mediated DecayToma KG, Rebbapragada I, Durand S* and Lykke-Andersen J RNA
How Retroviruses Escape the Nonsense-Mediated mRNA Decay?Mocquet V, Durand S, Jalinot P AIDS research and human retroviruses
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MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.
Han H, Irimia M, Ross PJ, Sung HK, Alipanahi B, David L, Golipour A, Gabut M, Michael IP, Nachman EN, Wang E, Trcka D, Thompson T, O'Hanlon D, Slobodeniuc V, Barbosa-Morais NL, Burge CB, Moffat J, Frey BJ, Nagy A, Ellis J, Wrana JL, Blencowe BJ. Nature
Nonsense-mediated mRNA decay occurs during eIF4Fdependent translation in human cellsDurand S and Lykke-Andersen J Nat Struct Mol Biol
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Pluripotence des cellules souches: quand l’épissage alternatif s’en mêle
Gabut M Médecine Sciences
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An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
Gabut M, Samavarchi-Tehrani P, Wang X, Slobodeniuc V, O'Hanlon D, Sung HK, Alvarez M, Talukder S, Pan Q, Mazzoni EO, Nedelec S, Wichterle H, Woltjen K, Hughes TR, Zandstra PW, Nagy A, Wrana JL, Blencowe BJ. Cell
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Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.
Calarco JA, Superina S, O'Hanlon D, Gabut M, Raj B, Pan Q, Skalska U, Clarke L, Gelinas D, van der Kooy D, Zhen M, Ciruna B, Blencowe BJ. Cell
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Interleukin-8 expression is regulated by histone deacetylases through the NF-{kappa}B pathway in breast cancer
Chavey C, Muhlbauer M, Bossard C, Freund A, Durand S, Jorgensen C, Jobin C, Lazennec G Molecular Pharmacology
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Inhibition of nonsense-mediated mRNA decay (NMD) by a novel chemical molecule reveals the dynamic of NMD factors in P-bodies
Durand S, Cougot N, Mahuteau-Betzer F, Nguyen CH, Grierson DS, Bertrand E, Tazi J and Lejeune F Journal of Cell Biology
The SR family proteins B52 and dASF/SF2 modulate development of the Drosophila visual system by regulating specific RNA targetsGabut M, Dejardin J, Tazi J, Soret J. Mol Cell Biol
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SR proteins as potential targets for therapy
Soret J, Gabut M, Tazi J. SR Prog Mol Subcell Biol
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The spliceosome: a novel multi-faceted target for therapy
Tazi J, Durand S, Jeanteur P Trends in Biochemical Sciences
Selective modification of alternative splicing by indole derivatives that target serine-arginine-rich protein splicing factorsSoret J, Bakkour N, Maire S, Durand S, Zekri L, Gabut M, Fic W, Divita G, Rivalle C, Dauzonne D, Nguyen CH, Jeanteur P, Tazi J PNAS
The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosisGabut M, Miné M, Marsac C, Brivet M, Tazi J, Soret J Mol Cell Biol
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Mechanisms underlying differential expression of interleukin-8 in breast cancer cells
Freund A, Jolivel V, Durand S, Kersual N, Chalbos D, Chavey C, Vignon F, Lazennec G Oncogene
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Altered serine/arginine-rich protein phosphorylation and exonic enhancer-dependent splicing in Mammalian cells lacking topoisomerase I
Soret J*, Gabut M*, Dupon C, Kohlhagen G, Stévenin J Cancer Research
Inheritance of Polycomb-dependent chromosomal interactions in DrosophilaBantignies F, Grimaud C, Lavrov S, Gabut M, Cavalli G Genes Dev.